Index

A

add_force() (msibi.optimize.MSIBI method) add_state() (msibi.optimize.MSIBI method) alpha() (msibi.state.State method)

alpha0 (msibi.state.State property) Angle (class in msibi.forces) angles (msibi.optimize.MSIBI property)

B

Bond (class in msibi.forces)

bonds (msibi.optimize.MSIBI property)

C

current_distribution() (msibi.forces.Force method)

D

Dihedral (class in msibi.forces) dihedrals (msibi.optimize.MSIBI property)

distribution_fit() (msibi.forces.Force method) distribution_history() (msibi.forces.Force method)

F

Force (class in msibi.forces)

force (msibi.forces.Force property)

G

gsd_from_files() (in module msibi.utils.conversion)

gsd_from_universe() (in module msibi.utils.conversion)

M

module msibi.optimize msibi.state msibi.utils.conversion MSIBI (class in msibi.optimize)

msibi.optimize module msibi.state module msibi.utils.conversion module

N

n_frames (msibi.state.State property)

nbins (msibi.forces.Force property)

P

Pair (class in msibi.forces) pairs (msibi.optimize.MSIBI property) pickle_forces() (msibi.optimize.MSIBI method) plot_distribution_comparison() (msibi.forces.Force method)

plot_fit_scores() (msibi.forces.Force method) plot_potential() (msibi.forces.Force method) plot_potential_history() (msibi.forces.Force method) plot_target_distribution() (msibi.forces.Force method) potential (msibi.forces.Force property)

R

run_optimization() (msibi.optimize.MSIBI method)

S

sampling_stride (msibi.state.State property) save_potential() (msibi.forces.Force method) save_potential_history() (msibi.forces.Force method) save_state_data() (msibi.forces.Force method) set_from_file() (msibi.forces.Force method) set_harmonic() (msibi.forces.Angle method) (msibi.forces.Bond method) set_lj() (msibi.forces.Pair method) set_periodic() (msibi.forces.Dihedral method)

set_polynomial() (msibi.forces.Force method) set_state_params() (msibi.forces.Angle method) (msibi.forces.Bond method) (msibi.forces.Dihedral method) (msibi.forces.Pair method) set_target_distribution() (msibi.forces.Force method) smooth_potential() (msibi.forces.Force method) smoothing_order (msibi.forces.Force property) smoothing_window (msibi.forces.Force property) State (class in msibi.state)

T

target_distribution() (msibi.forces.Force method)